WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42G9A.6d.1 Sequence Name  Y42G9A.6d.1
Length (nt)  1962   Chromosome Location  III: 6142123-6149546
Chromosome . Primary Identifier  III Chromosome Location . Start  6142123
Chromosome Location . End  6149546 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42G9A.6d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021535 wht-7 Y42G9A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42G9A.6d Y42G9A.6d 1962   III: 6142123-6142295

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.6d.1 6142123 6149546 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91380   173   III: 6142123-6142295 Caenorhabditis elegans
Exon91385   439   III: 6142340-6142778 Caenorhabditis elegans
Exon91393   302   III: 6142828-6143129 Caenorhabditis elegans
Exon91401   257   III: 6143177-6143433 Caenorhabditis elegans
Exon91409   170   III: 6143807-6143976 Caenorhabditis elegans
Exon91417   96   III: 6144026-6144121 Caenorhabditis elegans
Exon91426   183   III: 6144169-6144351 Caenorhabditis elegans
Exon91443   128   III: 6149067-6149194 Caenorhabditis elegans
Exon91449   109   III: 6149238-6149346 Caenorhabditis elegans
Exon91457   57   III: 6149393-6149449 Caenorhabditis elegans
Exon91459   48   III: 6149499-6149546 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.6d.1 6142123 6149546 -1

1 Sequence

Length
1962

1 Sequence Ontology Term

Identifier Name Description
transcript