WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y42G9A.1 Sequence Name  Y42G9A.1
Length (nt)  906   Chromosome Location  III: 6150016-6150062
Chromosome . Primary Identifier  III Chromosome Location . Start  6150016
Chromosome Location . End  6150062
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42G9A.1

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE24274 ROTR-1 34.4 301 Caenorhabditis elegans
 

Other

19 RNAi

WormBase ID
WBRNAi00056431
WBRNAi00020516
WBRNAi00020517
WBRNAi00026701
WBRNAi00088198
WBRNAi00088321
WBRNAi00037020
WBRNAi00001289
WBRNAi00027522
WBRNAi00107031
WBRNAi00107043
WBRNAi00088065
WBRNAi00088106
WBRNAi00088157
WBRNAi00088239
WBRNAi00088280
WBRNAi00088362
WBRNAi00088403
WBRNAi00106939

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y42G9A.1 6150016 6150062 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021531 rotr-1 Y42G9A.1 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y42G9A.1 6150016 6150062 1
CDS:Y42G9A.1 6150114 6150153 1
CDS:Y42G9A.1 6150275 6150384 1
CDS:Y42G9A.1 6153512 6153620 1
CDS:Y42G9A.1 6153686 6153817 1
CDS:Y42G9A.1 6154104 6154292 1
CDS:Y42G9A.1 6154406 6154534 1
CDS:Y42G9A.1 6154584 6154733 1

1 Sequence

Length
906

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y42G9A.1.1 Y42G9A.1.1 1168   III: 6149961-6154940