WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42A10.8.1 Sequence Name  F42A10.8.1
Length (nt)  1610   Chromosome Location  III: 6180962-6183218
Chromosome . Primary Identifier  III Chromosome Location . Start  6180962
Chromosome Location . End  6183218 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42A10.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003546 nas-28 F42A10.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42A10.8 F42A10.8 1494   III: 6181078-6181237

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42A10.8.1 6180962 6183218 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91590   276   III: 6180962-6181237 Caenorhabditis elegans
Exon91591   224   III: 6181288-6181511 Caenorhabditis elegans
Exon91592   152   III: 6181560-6181711 Caenorhabditis elegans
Exon91593   132   III: 6181883-6182014 Caenorhabditis elegans
Exon91594   202   III: 6182059-6182260 Caenorhabditis elegans
Exon91595   120   III: 6182353-6182472 Caenorhabditis elegans
Exon91596   71   III: 6182519-6182589 Caenorhabditis elegans
Exon91597   165   III: 6182637-6182801 Caenorhabditis elegans
Exon91598   70   III: 6182848-6182917 Caenorhabditis elegans
Exon91599   198   III: 6183021-6183218 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42A10.8.1 6180962 6183218 -1

1 Sequence

Length
1610

1 Sequence Ontology Term

Identifier Name Description
transcript