WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C56G2.1c.1 Sequence Name  C56G2.1c.1
Length (nt)  2544   Chromosome Location  III: 6353482-6365419
Chromosome . Primary Identifier  III Chromosome Location . Start  6353482
Chromosome Location . End  6365419 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56G2.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016977 akap-1 C56G2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C56G2.1c C56G2.1c 2544   III: 6353482-6353780

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C56G2.1c.1 6353482 6365419 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92031   299   III: 6353482-6353780 Caenorhabditis elegans
Exon92034   75   III: 6354399-6354473 Caenorhabditis elegans
Exon92038   156   III: 6354801-6354956 Caenorhabditis elegans
Exon92042   73   III: 6355056-6355128 Caenorhabditis elegans
Exon92046   171   III: 6356365-6356535 Caenorhabditis elegans
Exon92050   150   III: 6357089-6357238 Caenorhabditis elegans
Exon92057   113   III: 6357655-6357767 Caenorhabditis elegans
Exon92061   278   III: 6357813-6358090 Caenorhabditis elegans
Exon92065   125   III: 6358558-6358682 Caenorhabditis elegans
Exon92073   156   III: 6363686-6363841 Caenorhabditis elegans
Exon92078   84   III: 6363900-6363983 Caenorhabditis elegans
Exon92083   334   III: 6364040-6364373 Caenorhabditis elegans
Exon92088   368   III: 6364804-6365171 Caenorhabditis elegans
Exon92091   162   III: 6365258-6365419 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C56G2.1c.1 6353482 6365419 1

1 Sequence

Length
2544

1 Sequence Ontology Term

Identifier Name Description
transcript