WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C56G2.1a.1 Sequence Name  C56G2.1a.1
Length (nt)  3942   Chromosome Location  III: 6353384-6366659
Chromosome . Primary Identifier  III Chromosome Location . Start  6353384
Chromosome Location . End  6366659 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56G2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016977 akap-1 C56G2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C56G2.1a C56G2.1a 2604   III: 6353482-6353780

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C56G2.1a.1 6353384 6366659 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92067   397   III: 6353384-6353780 Caenorhabditis elegans
Exon92070   75   III: 6354399-6354473 Caenorhabditis elegans
Exon92074   156   III: 6354801-6354956 Caenorhabditis elegans
Exon92078   73   III: 6355056-6355128 Caenorhabditis elegans
Exon92082   171   III: 6356365-6356535 Caenorhabditis elegans
Exon92086   150   III: 6357089-6357238 Caenorhabditis elegans
Exon92091   60   III: 6357523-6357582 Caenorhabditis elegans
Exon92093   113   III: 6357655-6357767 Caenorhabditis elegans
Exon92097   278   III: 6357813-6358090 Caenorhabditis elegans
Exon92101   125   III: 6358558-6358682 Caenorhabditis elegans
Exon92108   156   III: 6363686-6363841 Caenorhabditis elegans
Exon92113   84   III: 6363900-6363983 Caenorhabditis elegans
Exon92118   334   III: 6364040-6364373 Caenorhabditis elegans
Exon92123   368   III: 6364804-6365171 Caenorhabditis elegans
Exon92130   1402   III: 6365258-6366659 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C56G2.1a.1 6353384 6366659 1

1 Sequence

Length
3942

1 Sequence Ontology Term

Identifier Name Description
transcript