WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16A3.8.1 Sequence Name  C16A3.8.1
Length (nt)  4450   Chromosome Location  III: 6368042-6373904
Chromosome . Primary Identifier  III Chromosome Location . Start  6368042
Chromosome Location . End  6373904 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16A3.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015813 thoc-2 C16A3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16A3.8 C16A3.8 4314   III: 6368046-6368141

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16A3.8.1 6368042 6373904 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92137   100   III: 6368042-6368141 Caenorhabditis elegans
Exon92138   132   III: 6368190-6368321 Caenorhabditis elegans
Exon92139   92   III: 6368523-6368614 Caenorhabditis elegans
Exon92140   220   III: 6368661-6368880 Caenorhabditis elegans
Exon92141   183   III: 6369101-6369283 Caenorhabditis elegans
Exon92142   153   III: 6369334-6369486 Caenorhabditis elegans
Exon92143   505   III: 6369535-6370039 Caenorhabditis elegans
Exon92144   402   III: 6370268-6370669 Caenorhabditis elegans
Exon92145   820   III: 6370983-6371802 Caenorhabditis elegans
Exon92146   109   III: 6371851-6371959 Caenorhabditis elegans
Exon92147   139   III: 6372002-6372140 Caenorhabditis elegans
Exon92148   860   III: 6372189-6373048 Caenorhabditis elegans
Exon92149   381   III: 6373104-6373484 Caenorhabditis elegans
Exon92150   354   III: 6373551-6373904 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16A3.8.1 6368042 6373904 1

1 Sequence

Length
4450

1 Sequence Ontology Term

Identifier Name Description
transcript