WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D11.2.1 Sequence Name  C05D11.2.1
Length (nt)  2719   Chromosome Location  III: 6433239-6436502
Chromosome . Primary Identifier  III Chromosome Location . Start  6433239
Chromosome Location . End  6436502 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D11.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006516 vps-16 C05D11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D11.2 C05D11.2 2559   III: 6433241-6433335

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D11.2.1 6433239 6436502 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92276   97   III: 6433239-6433335 Caenorhabditis elegans
Exon92277   86   III: 6433406-6433491 Caenorhabditis elegans
Exon92278   342   III: 6433544-6433885 Caenorhabditis elegans
Exon92279   227   III: 6433935-6434161 Caenorhabditis elegans
Exon92280   185   III: 6434214-6434398 Caenorhabditis elegans
Exon92281   847   III: 6434445-6435291 Caenorhabditis elegans
Exon92282   216   III: 6435337-6435552 Caenorhabditis elegans
Exon92283   221   III: 6435688-6435908 Caenorhabditis elegans
Exon92284   201   III: 6435957-6436157 Caenorhabditis elegans
Exon92285   297   III: 6436206-6436502 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D11.2.1 6433239 6436502 1

1 Sequence

Length
2719

1 Sequence Ontology Term

Identifier Name Description
transcript