WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D11.9.1 Sequence Name  C05D11.9.1
Length (nt)  2409   Chromosome Location  III: 6427526-6430934
Chromosome . Primary Identifier  III Chromosome Location . Start  6427526
Chromosome Location . End  6430934 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D11.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015486 popl-1 C05D11.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D11.9 C05D11.9 2259   III: 6427643-6427731

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D11.9.1 6427526 6430934 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92298   206   III: 6427526-6427731 Caenorhabditis elegans
Exon92299   116   III: 6427776-6427891 Caenorhabditis elegans
Exon92300   141   III: 6427939-6428079 Caenorhabditis elegans
Exon92301   679   III: 6428300-6428978 Caenorhabditis elegans
Exon92302   149   III: 6429028-6429176 Caenorhabditis elegans
Exon92303   524   III: 6429228-6429751 Caenorhabditis elegans
Exon92304   84   III: 6429873-6429956 Caenorhabditis elegans
Exon92305   195   III: 6430330-6430524 Caenorhabditis elegans
Exon92306   219   III: 6430572-6430790 Caenorhabditis elegans
Exon92307   96   III: 6430839-6430934 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D11.9.1 6427526 6430934 -1

1 Sequence

Length
2409

1 Sequence Ontology Term

Identifier Name Description
transcript