WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T26A5.5a.1 Sequence Name  T26A5.5a.1
Length (nt)  4060   Chromosome Location  III: 6454483-6460014
Chromosome . Primary Identifier  III Chromosome Location . Start  6454483
Chromosome Location . End  6460014 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T26A5.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020821 jhdm-1 T26A5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T26A5.5a T26A5.5a 3450   III: 6454483-6454796

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T26A5.5a.1 6454483 6460014 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92355   314   III: 6454483-6454796 Caenorhabditis elegans
Exon92356   132   III: 6454845-6454976 Caenorhabditis elegans
Exon92358   577   III: 6455027-6455603 Caenorhabditis elegans
Exon92360   250   III: 6455652-6455901 Caenorhabditis elegans
Exon92362   135   III: 6456020-6456154 Caenorhabditis elegans
Exon92364   77   III: 6456200-6456276 Caenorhabditis elegans
Exon92366   243   III: 6456332-6456574 Caenorhabditis elegans
Exon92369   45   III: 6457416-6457460 Caenorhabditis elegans
Exon92371   777   III: 6457525-6458301 Caenorhabditis elegans
Exon92373   193   III: 6458353-6458545 Caenorhabditis elegans
Exon92375   410   III: 6458602-6459011 Caenorhabditis elegans
Exon92377   212   III: 6459060-6459271 Caenorhabditis elegans
Exon92380   695   III: 6459320-6460014 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T26A5.5a.1 6454483 6460014 1

1 Sequence

Length
4060

1 Sequence Ontology Term

Identifier Name Description
transcript