WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305970 Gene Name  C09E7.11
Sequence Name  ? C09E7.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by mrps-5 based on microarray studies. Is affected by dibromoacetic acid and adsorbable organic bromine compound based on microarray studies. Biotype  SO:0001217
Genetic Position  III:± Length (nt)  ? 624
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305970

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C09E7.11.1 C09E7.11.1 489   III: 6531399-6532022
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09E7.11 C09E7.11 489   III: 6531399-6531520

0 RNAi Result

8 Allele

Public Name
gk964518
gk964032
gk964033
WBVar01656883
WBVar01645139
gk849393
gk598390
gk176781

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305970 6531399 6532022 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_6532023..6532946   924 III: 6532023-6532946 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in mrps-5(RNAi) comparing to in control animals. Fold change > 4, p-value < 0.01 WBPaper00056330:mrps-5(RNAi)_downregulated
  Genes that showed significantly increased expression after exposure to adsorbable organic bromine compounds (AOBr) contained in M. aeruginosa batch culture. Differentially expressed genes (DEGs) were identified with a random variance t-test and a significance analysis of microarrays (SAM) test. Genes were considered statistically significant if their p-value was less than 0.05, the false discovery rate less than 0.3, and the fold change compared to control at least <= 0.67 or >=1.5. WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
  Genes with variation in expression level across genotypes (AB2, CB4856, RC301, CB4857, N2, HC445). two-way ANOVA WBPaper00041174:genotypic
  Genes that showed decreased expression after 50uM DBAA treatment comparing with control. Differentially expressed genes (DEGs) were identified with a random variance t test and a significance analysis of microarrays (SAM) test. Genes were considered statistically significant if their p value was less than 0.05, the false discovery rate less than 0.3 and the fold change compared to control at least <= 0.67 or >= 1.5. WBPaper00045294:50uM_DBAA_downregulated
  Genes with significant variation in expression level only across genotypes(AB2, CB4856, RC301, CB4857, N2, HC445), but not environments (control, 25C, High-pH-Salt, Liquid, infection). two-way ANOVA WBPaper00041174:genotypic_prime

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305970 6531399 6532022 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
624

1 Sequence Ontology Term