WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09E7.8b.1 Sequence Name  C09E7.8b.1
Length (nt)  2430   Chromosome Location  III: 6553700-6556906
Chromosome . Primary Identifier  III Chromosome Location . Start  6553700
Chromosome Location . End  6556906 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09E7.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015642 C09E7.8 C09E7.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09E7.8b C09E7.8b 2430   III: 6553700-6553789

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09E7.8b.1 6553700 6556906 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92705   90   III: 6553700-6553789 Caenorhabditis elegans
Exon92707   538   III: 6553838-6554375 Caenorhabditis elegans
Exon92709   234   III: 6554423-6554656 Caenorhabditis elegans
Exon92711   42   III: 6554702-6554743 Caenorhabditis elegans
Exon92713   108   III: 6554788-6554895 Caenorhabditis elegans
Exon92715   93   III: 6554942-6555034 Caenorhabditis elegans
Exon92717   168   III: 6555079-6555246 Caenorhabditis elegans
Exon92719   391   III: 6555299-6555689 Caenorhabditis elegans
Exon92721   112   III: 6555734-6555845 Caenorhabditis elegans
Exon92723   318   III: 6555893-6556210 Caenorhabditis elegans
Exon92725   210   III: 6556524-6556733 Caenorhabditis elegans
Exon92726   126   III: 6556781-6556906 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09E7.8b.1 6553700 6556906 -1

1 Sequence

Length
2430

1 Sequence Ontology Term

Identifier Name Description
transcript