WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09E7.8a.1 Sequence Name  C09E7.8a.1
Length (nt)  3430   Chromosome Location  III: 6553627-6558587
Chromosome . Primary Identifier  III Chromosome Location . Start  6553627
Chromosome Location . End  6558587 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09E7.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015642 C09E7.8 C09E7.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09E7.8a C09E7.8a 3345   III: 6553700-6553789

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09E7.8a.1 6553627 6558587 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92742   163   III: 6553627-6553789 Caenorhabditis elegans
Exon92744   538   III: 6553838-6554375 Caenorhabditis elegans
Exon92746   234   III: 6554423-6554656 Caenorhabditis elegans
Exon92748   42   III: 6554702-6554743 Caenorhabditis elegans
Exon92750   108   III: 6554788-6554895 Caenorhabditis elegans
Exon92752   93   III: 6554942-6555034 Caenorhabditis elegans
Exon92754   168   III: 6555079-6555246 Caenorhabditis elegans
Exon92756   391   III: 6555299-6555689 Caenorhabditis elegans
Exon92758   112   III: 6555734-6555845 Caenorhabditis elegans
Exon92760   318   III: 6555893-6556210 Caenorhabditis elegans
Exon92762   210   III: 6556524-6556733 Caenorhabditis elegans
Exon92765   210   III: 6556781-6556990 Caenorhabditis elegans
Exon92766   282   III: 6557332-6557613 Caenorhabditis elegans
Exon92767   150   III: 6557660-6557809 Caenorhabditis elegans
Exon92768   105   III: 6557855-6557959 Caenorhabditis elegans
Exon92769   104   III: 6558192-6558295 Caenorhabditis elegans
Exon92770   106   III: 6558343-6558448 Caenorhabditis elegans
Exon92771   96   III: 6558492-6558587 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09E7.8a.1 6553627 6558587 -1

1 Sequence

Length
3430

1 Sequence Ontology Term

Identifier Name Description
transcript