WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40D12A.2.1 Sequence Name  Y40D12A.2.1
Length (nt)  1647   Chromosome Location  III: 6612528-6615149
Chromosome . Primary Identifier  III Chromosome Location . Start  6612528
Chromosome Location . End  6615149 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40D12A.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021503 ctsa-4.2 Y40D12A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40D12A.2 Y40D12A.2 1539   III: 6612553-6612621

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40D12A.2.1 6612528 6615149 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92848   94   III: 6612528-6612621 Caenorhabditis elegans
Exon92849   86   III: 6612669-6612754 Caenorhabditis elegans
Exon92850   292   III: 6612971-6613262 Caenorhabditis elegans
Exon92851   120   III: 6613308-6613427 Caenorhabditis elegans
Exon92852   92   III: 6613559-6613650 Caenorhabditis elegans
Exon92853   94   III: 6613693-6613786 Caenorhabditis elegans
Exon92854   204   III: 6613835-6614038 Caenorhabditis elegans
Exon92855   122   III: 6614082-6614203 Caenorhabditis elegans
Exon92856   82   III: 6614257-6614338 Caenorhabditis elegans
Exon92857   461   III: 6614689-6615149 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40D12A.2.1 6612528 6615149 1

1 Sequence

Length
1647

1 Sequence Ontology Term

Identifier Name Description
transcript