WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40D12A.1.1 Sequence Name  Y40D12A.1.1
Length (nt)  2121   Chromosome Location  III: 6615414-6620051
Chromosome . Primary Identifier  III Chromosome Location . Start  6615414
Chromosome Location . End  6620051 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40D12A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021502 cmtr-2 Y40D12A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40D12A.1 Y40D12A.1 1908   III: 6615431-6615520

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40D12A.1.1 6615414 6620051 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92858   107   III: 6615414-6615520 Caenorhabditis elegans
Exon92859   96   III: 6615588-6615683 Caenorhabditis elegans
Exon92860   89   III: 6615746-6615834 Caenorhabditis elegans
Exon92861   93   III: 6615883-6615975 Caenorhabditis elegans
Exon92862   313   III: 6616021-6616333 Caenorhabditis elegans
Exon92863   213   III: 6616376-6616588 Caenorhabditis elegans
Exon92864   203   III: 6616631-6616833 Caenorhabditis elegans
Exon92865   151   III: 6616883-6617033 Caenorhabditis elegans
Exon92866   72   III: 6617081-6617152 Caenorhabditis elegans
Exon92867   96   III: 6619117-6619212 Caenorhabditis elegans
Exon92868   162   III: 6619262-6619423 Caenorhabditis elegans
Exon92869   147   III: 6619477-6619623 Caenorhabditis elegans
Exon92870   379   III: 6619673-6620051 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40D12A.1.1 6615414 6620051 1

1 Sequence

Length
2121

1 Sequence Ontology Term

Identifier Name Description
transcript