WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C13B9.4c.2 Sequence Name  C13B9.4c.2
Length (nt)  2996   Chromosome Location  III: 6632837-6652083
Chromosome . Primary Identifier  III Chromosome Location . Start  6632837
Chromosome Location . End  6652083 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C13B9.4c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015735 pdfr-1 C13B9.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C13B9.4c C13B9.4c 1626   III: 6634082-6634165

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C13B9.4c.2 6632837 6652083 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92893   630   III: 6632837-6633466 Caenorhabditis elegans
Exon92907   102   III: 6634064-6634165 Caenorhabditis elegans
Exon92924   99   III: 6634304-6634402 Caenorhabditis elegans
Exon92937   138   III: 6634451-6634588 Caenorhabditis elegans
Exon92950   90   III: 6634740-6634829 Caenorhabditis elegans
Exon92963   323   III: 6634877-6635199 Caenorhabditis elegans
Exon92976   157   III: 6635246-6635402 Caenorhabditis elegans
Exon92989   157   III: 6635449-6635605 Caenorhabditis elegans
Exon93002   104   III: 6636012-6636115 Caenorhabditis elegans
Exon93012   155   III: 6636402-6636556 Caenorhabditis elegans
Exon93028   123   III: 6638070-6638192 Caenorhabditis elegans
Exon93041   46   III: 6638351-6638396 Caenorhabditis elegans
Exon93054   69   III: 6638492-6638560 Caenorhabditis elegans
Exon93066   103   III: 6638744-6638846 Caenorhabditis elegans
Exon93079   57   III: 6650969-6651025 Caenorhabditis elegans
Exon93084   333   III: 6651103-6651435 Caenorhabditis elegans
Exon93088   310   III: 6651774-6652083 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C13B9.4c.2 6632837 6652083 -1

1 Sequence

Length
2996

1 Sequence Ontology Term

Identifier Name Description
transcript