WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C13B9.4a Sequence Name  C13B9.4a
Length (nt)  1641   Chromosome Location  III: 6633439-6633466
Chromosome . Primary Identifier  III Chromosome Location . Start  6633439
Chromosome Location . End  6633466
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C13B9.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30860 PDFR-1, isoform a 61.7 546 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00040427
WBRNAi00027171
WBRNAi00010677
WBRNAi00024543
WBRNAi00024544
WBRNAi00005367
WBRNAi00028838

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C13B9.4a 6633439 6633466 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015735 pdfr-1 C13B9.4 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:C13B9.4a 6633439 6633466 -1
CDS:C13B9.4a 6634095 6634165 -1
CDS:C13B9.4a 6634304 6634402 -1
CDS:C13B9.4a 6634451 6634588 -1
CDS:C13B9.4a 6634740 6634829 -1
CDS:C13B9.4a 6634877 6635199 -1
CDS:C13B9.4a 6635246 6635402 -1
CDS:C13B9.4a 6635449 6635605 -1
CDS:C13B9.4a 6636012 6636115 -1
CDS:C13B9.4a 6636402 6636556 -1
CDS:C13B9.4a 6638070 6638192 -1
CDS:C13B9.4a 6638351 6638396 -1
CDS:C13B9.4a 6638492 6638560 -1
CDS:C13B9.4a 6638744 6638824 -1

1 Sequence

Length
1641

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C13B9.4a.3 C13B9.4a.3 2263   III: 6632841-6638848
Transcript:C13B9.4a.1 C13B9.4a.1 2318   III: 6632841-6651025
Transcript:C13B9.4a.2 C13B9.4a.2 2961   III: 6632841-6652083