WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C13B9.4c.1 Sequence Name  C13B9.4c.1
Length (nt)  2307   Chromosome Location  III: 6632883-6651025
Chromosome . Primary Identifier  III Chromosome Location . Start  6632883
Chromosome Location . End  6651025 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C13B9.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015735 pdfr-1 C13B9.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C13B9.4c C13B9.4c 1626   III: 6634082-6634165

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C13B9.4c.1 6632883 6651025 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92940   584   III: 6632883-6633466 Caenorhabditis elegans
Exon92944   102   III: 6634064-6634165 Caenorhabditis elegans
Exon92961   99   III: 6634304-6634402 Caenorhabditis elegans
Exon92974   138   III: 6634451-6634588 Caenorhabditis elegans
Exon92987   90   III: 6634740-6634829 Caenorhabditis elegans
Exon93000   323   III: 6634877-6635199 Caenorhabditis elegans
Exon93013   157   III: 6635246-6635402 Caenorhabditis elegans
Exon93026   157   III: 6635449-6635605 Caenorhabditis elegans
Exon93039   104   III: 6636012-6636115 Caenorhabditis elegans
Exon93049   155   III: 6636402-6636556 Caenorhabditis elegans
Exon93065   123   III: 6638070-6638192 Caenorhabditis elegans
Exon93078   46   III: 6638351-6638396 Caenorhabditis elegans
Exon93091   69   III: 6638492-6638560 Caenorhabditis elegans
Exon93103   103   III: 6638744-6638846 Caenorhabditis elegans
Exon93116   57   III: 6650969-6651025 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C13B9.4c.1 6632883 6651025 -1

1 Sequence

Length
2307

1 Sequence Ontology Term

Identifier Name Description
transcript