WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28F5.3a.1 Sequence Name  F28F5.3a.1
Length (nt)  3264   Chromosome Location  III: 6806532-6815955
Chromosome . Primary Identifier  III Chromosome Location . Start  6806532
Chromosome Location . End  6815955 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28F5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017904 lim-8 F28F5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28F5.3a F28F5.3a 3015   III: 6806604-6806726

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28F5.3a.1 6806532 6815955 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon93439   195   III: 6806532-6806726 Caenorhabditis elegans
Exon93441   172   III: 6809566-6809737 Caenorhabditis elegans
Exon93444   239   III: 6809815-6810053 Caenorhabditis elegans
Exon93447   243   III: 6810098-6810340 Caenorhabditis elegans
Exon93450   321   III: 6810665-6810985 Caenorhabditis elegans
Exon93453   124   III: 6811122-6811245 Caenorhabditis elegans
Exon93456   68   III: 6811288-6811355 Caenorhabditis elegans
Exon93459   263   III: 6811403-6811665 Caenorhabditis elegans
Exon93462   172   III: 6811712-6811883 Caenorhabditis elegans
Exon93465   87   III: 6812155-6812241 Caenorhabditis elegans
Exon93468   63   III: 6813569-6813631 Caenorhabditis elegans
Exon93471   543   III: 6814175-6814717 Caenorhabditis elegans
Exon93473   101   III: 6815004-6815104 Caenorhabditis elegans
Exon93476   311   III: 6815151-6815461 Caenorhabditis elegans
Exon93479   87   III: 6815504-6815590 Caenorhabditis elegans
Exon93483   275   III: 6815681-6815955 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28F5.3a.1 6806532 6815955 1

1 Sequence

Length
3264

1 Sequence Ontology Term

Identifier Name Description
transcript