WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28F5.3b.1 Sequence Name  F28F5.3b.1
Length (nt)  2792   Chromosome Location  III: 6807580-6815963
Chromosome . Primary Identifier  III Chromosome Location . Start  6807580
Chromosome Location . End  6815963 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28F5.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017904 lim-8 F28F5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28F5.3b F28F5.3b 2607   III: 6807580-6807837

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28F5.3b.1 6807580 6815963 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon93440   258   III: 6807580-6807837 Caenorhabditis elegans
Exon93442   172   III: 6809566-6809737 Caenorhabditis elegans
Exon93445   239   III: 6809815-6810053 Caenorhabditis elegans
Exon93448   243   III: 6810098-6810340 Caenorhabditis elegans
Exon93451   321   III: 6810665-6810985 Caenorhabditis elegans
Exon93454   124   III: 6811122-6811245 Caenorhabditis elegans
Exon93457   68   III: 6811288-6811355 Caenorhabditis elegans
Exon93460   263   III: 6811403-6811665 Caenorhabditis elegans
Exon93463   172   III: 6811712-6811883 Caenorhabditis elegans
Exon93466   87   III: 6812155-6812241 Caenorhabditis elegans
Exon93469   63   III: 6813569-6813631 Caenorhabditis elegans
Exon93474   101   III: 6815004-6815104 Caenorhabditis elegans
Exon93477   311   III: 6815151-6815461 Caenorhabditis elegans
Exon93480   87   III: 6815504-6815590 Caenorhabditis elegans
Exon93484   283   III: 6815681-6815963 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28F5.3b.1 6807580 6815963 1

1 Sequence

Length
2792

1 Sequence Ontology Term

Identifier Name Description
transcript