WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F57B9.10a Sequence Name  F57B9.10a
Length (nt)  1317   Chromosome Location  III: 6959391-6959579
Chromosome . Primary Identifier  III Chromosome Location . Start  6959391
Chromosome Location . End  6959579
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57B9.10a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE25011 RPN-6.1, isoform a 49.1 438 Caenorhabditis elegans
 

Other

51 RNAi

WormBase ID
WBRNAi00095651
WBRNAi00108315
WBRNAi00099962
WBRNAi00100500
WBRNAi00085517
WBRNAi00008885
WBRNAi00064992
WBRNAi00090982
WBRNAi00048832
WBRNAi00048833
WBRNAi00033017
WBRNAi00100874
WBRNAi00099356
WBRNAi00099558
WBRNAi00099760
WBRNAi00101150
WBRNAi00094609
WBRNAi00094610
WBRNAi00076498
WBRNAi00073145
WBRNAi00073144
WBRNAi00073146
WBRNAi00112093
WBRNAi00002488
WBRNAi00002782
WBRNAi00022814
WBRNAi00025731
WBRNAi00114580
WBRNAi00100126
WBRNAi00100313

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F57B9.10a 6959391 6959579 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004462 rpn-6.1 F57B9.10 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:F57B9.10a 6959391 6959579 -1
CDS:F57B9.10a 6959659 6959964 -1
CDS:F57B9.10a 6960019 6960347 -1
CDS:F57B9.10a 6960399 6960528 -1
CDS:F57B9.10a 6960574 6960797 -1
CDS:F57B9.10a 6960848 6960940 -1
CDS:F57B9.10a 6961908 6961953 -1

1 Sequence

Length
1317

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F57B9.10a.1 F57B9.10a.1 1646   III: 6959110-6962001