Genomics
2 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F31E3.7a | F31E3.7a |
22
 |
III: 6968870-6968891 |
| Transcript:F31E3.7b | F31E3.7b |
22
|
III: 6968903-6968924 |
Other
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00194827 | 6968870 | 6968924 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIII_6968925..6969389 | 465 | III: 6968925-6969389 | Caenorhabditis elegans |
2 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| miRNA with decreased expression in prg-1(wm161) L1 larva comparing to in prg-1(wm161) embryo. | DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. | WBPaper00045316:miRNA_prg-1_L1_vs_embryo_downregulated_adult | |
| MicroRNAs that showed significantly increased expression in alg-5(ram2), comparing to in N2. | DESeq2, Fold change > 1.5. | WBPaper00051404:alg-5(ram2)_upregulated_miRNA |