WormMine: Gene WBGene00194827

• WormBase Gene ID: WBGene00194827
• Gene Name: mir-2213
• Sequence Name: F31E3.7
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by alg-5 based on RNA-seq studies.
• Biotype: SO:0001265
• Genetic Position: III :-0.872253 ±0.000539
• Length (nt): 55

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00194827

Genomics

2 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F31E3.7a	F31E3.7a	22	III: 6968870-6968891
Transcript:F31E3.7b	F31E3.7b	22	III: 6968903-6968924

Other

0 CDSs

0 RNAi Result

8 Allele

• gk964518
• gk963887
• gk964032
• gk964033
• gk919726
• gk366345
• gk177573
• WBVar00057555

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00194827
• Start: 6968870
• End: 6968924
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_6968925..6969389
• Length (nt): 465
• Chromosome Location: III: 6968925-6969389
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_downregulated
	miRNA with decreased expression in prg-1(wm161) L1 larva comparing to in prg-1(wm161) embryo.	DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively.	WBPaper00045316:miRNA_prg-1_L1_vs_embryo_downregulated_adult
	MicroRNAs that showed significantly increased expression in alg-5(ram2), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-5(ram2)_upregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00194827
• Start: 6968870
• End: 6968924
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 55

1 Sequence Ontology Term