WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0280.10a.1 Sequence Name  B0280.10a.1
Length (nt)  1216   Chromosome Location  III: 7131880-7133678
Chromosome . Primary Identifier  III Chromosome Location . Start  7131880
Chromosome Location . End  7133678 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0280.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015105 pot-1 B0280.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0280.10a B0280.10a 1203   III: 7131880-7132126

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0280.10a.1 7131880 7133678 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon94400   247   III: 7131880-7132126 Caenorhabditis elegans
Exon94401   38   III: 7132217-7132254 Caenorhabditis elegans
Exon94406   93   III: 7132307-7132399 Caenorhabditis elegans
Exon94411   89   III: 7132449-7132537 Caenorhabditis elegans
Exon94416   149   III: 7132592-7132740 Caenorhabditis elegans
Exon94422   143   III: 7132886-7133028 Caenorhabditis elegans
Exon94425   81   III: 7133073-7133153 Caenorhabditis elegans
Exon94429   98   III: 7133211-7133308 Caenorhabditis elegans
Exon94434   148   III: 7133355-7133502 Caenorhabditis elegans
Exon94438   130   III: 7133549-7133678 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0280.10a.1 7131880 7133678 -1

1 Sequence

Length
1216

1 Sequence Ontology Term

Identifier Name Description
transcript