WormMine: Gene WBGene00004837

• WormBase Gene ID: WBGene00004837
• Gene Name: sls-2.5
• Sequence Name: B0280.14
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including glh-4; glh-1; and pgl-1 based on RNA-seq studies.
• Biotype: SO:0001268
• Genetic Position: III :-0.78724 ±0.000564
• Length (nt): 107

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00004837

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:B0280.14	B0280.14	107	III: 7140447-7140553

Other

0 CDSs

5 RNAi Result

• WBRNAi00038840
• WBRNAi00038842
• WBRNAi00005381
• WBRNAi00005846
• WBRNAi00000815

10 Allele

• gk964518
• gk963887
• WBVar01265130
• tm669
• gk177911
• gk574472
• gk510196
• gk574471
• WBVar01446500
• WBVar01446503

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00004837
• Start: 7140447
• End: 7140553
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.	DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2.	WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
	Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.	DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.	WBPaper00060014:set-2(tm1630)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00004837
• Start: 7140447
• End: 7140553
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 107

1 Sequence Ontology Term