WormMine: Gene WBGene00219765

• WormBase Gene ID: WBGene00219765
• Gene Name: linc-165
• Sequence Name: Y69F12A.4
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by lag-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: III :-0.735544±
• Length (nt): 3838

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219765

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y69F12A.4	Y69F12A.4	2675	III: 7402234-7406071

Other

0 CDSs

0 RNAi Result

27 Allele

• gk964518
• gk963887
• gk786670
• ttTi55380
• gk707667
• WBVar00065152
• cxTi10767
• gk897274
• gk792362
• gk589893
• gk905000
• gk578951
• WBVar01330774
• WBVar01330775
• gk599259
• gk465243
• ttTi23398
• ttTi17426
• WBVar01628797
• gk178332
• gk178331
• WBVar00060315
• WBVar00060320
• WBVar00060325
• WBVar00060330
• WBVar02049709
• cxTi10626

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219765
• Start: 7402234
• End: 7406071
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_7395455..7402233
• Length (nt): 6779
• Chromosome Location: III: 7395455-7402233
• Organism: Caenorhabditis elegans

10 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Single-cell RNA-Seq cell group 111_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:111_0
	Transcripts interacting with LAG-1 at L4 larva stage in germline ChIP-Seq analysis.	edgeR fold change >= 2, FDR <= 0.05.	WBPaper00059440:LAG-1_interacting_germline
	Single-cell RNA-Seq cell group 144_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:144_0
	Single-cell RNA-Seq cell group 90_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:90_0
	Single-cell RNA-Seq cell group 83_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:83_0
	Single-cell RNA-Seq cell group 14_2 expressed in neuron.	scVI 0.6.0	WBPaper00065841:14_2
	Single-cell RNA-Seq cell group 14_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:14_0
	Single-cell RNA-Seq cell group 55_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:55_0
	Single-cell RNA-Seq cell group 14_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:14_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219765
• Start: 7402234
• End: 7406071
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 3838

1 Sequence Ontology Term