WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C07H6.3.1 Sequence Name  C07H6.3.1
Length (nt)  4274   Chromosome Location  III: 7508178-7515285
Chromosome . Primary Identifier  III Chromosome Location . Start  7508178
Chromosome Location . End  7515285 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C07H6.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015580 cls-1 C07H6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C07H6.3 C07H6.3 4137   III: 7508196-7508279

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C07H6.3.1 7508178 7515285 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon95338   102   III: 7508178-7508279 Caenorhabditis elegans
Exon95339   96   III: 7508335-7508430 Caenorhabditis elegans
Exon95340   186   III: 7509069-7509254 Caenorhabditis elegans
Exon95341   104   III: 7509300-7509403 Caenorhabditis elegans
Exon95342   177   III: 7509457-7509633 Caenorhabditis elegans
Exon95343   448   III: 7510383-7510830 Caenorhabditis elegans
Exon95344   384   III: 7510878-7511261 Caenorhabditis elegans
Exon95345   264   III: 7511642-7511905 Caenorhabditis elegans
Exon95346   124   III: 7512000-7512123 Caenorhabditis elegans
Exon95347   144   III: 7512172-7512315 Caenorhabditis elegans
Exon95348   81   III: 7512361-7512441 Caenorhabditis elegans
Exon95349   968   III: 7512674-7513641 Caenorhabditis elegans
Exon95350   170   III: 7513718-7513887 Caenorhabditis elegans
Exon95351   358   III: 7513993-7514350 Caenorhabditis elegans
Exon95352   483   III: 7514574-7515056 Caenorhabditis elegans
Exon95353   185   III: 7515101-7515285 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C07H6.3.1 7508178 7515285 1

1 Sequence

Length
4274

1 Sequence Ontology Term

Identifier Name Description
transcript