WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A5.1c.1 Sequence Name  R13A5.1c.1
Length (nt)  2215   Chromosome Location  III: 7584181-7591573
Chromosome . Primary Identifier  III Chromosome Location . Start  7584181
Chromosome Location . End  7591573 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A5.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000846 cup-5 R13A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A5.1c R13A5.1c 1890   III: 7584181-7584246

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1c.1 7584181 7591573 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon95475   66   III: 7584181-7584246 Caenorhabditis elegans
Exon95481   453   III: 7584689-7585141 Caenorhabditis elegans
Exon95486   184   III: 7585191-7585374 Caenorhabditis elegans
Exon95492   312   III: 7585419-7585730 Caenorhabditis elegans
Exon95499   272   III: 7586109-7586380 Caenorhabditis elegans
Exon95505   108   III: 7586662-7586769 Caenorhabditis elegans
Exon95518   228   III: 7589429-7589656 Caenorhabditis elegans
Exon95524   102   III: 7589703-7589804 Caenorhabditis elegans
Exon95527   139   III: 7590537-7590675 Caenorhabditis elegans
Exon95539   351   III: 7591223-7591573 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1c.1 7584181 7591573 1

1 Sequence

Length
2215

1 Sequence Ontology Term

Identifier Name Description
transcript