WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A5.1a.2 Sequence Name  R13A5.1a.2
Length (nt)  2268   Chromosome Location  III: 7584341-7591574
Chromosome . Primary Identifier  III Chromosome Location . Start  7584341
Chromosome Location . End  7591574 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A5.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000846 cup-5 R13A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A5.1a R13A5.1a 1824   III: 7584689-7585141

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1a.2 7584341 7591574 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon95484   23   III: 7584341-7584363 Caenorhabditis elegans
Exon95488   453   III: 7584689-7585141 Caenorhabditis elegans
Exon95492   184   III: 7585191-7585374 Caenorhabditis elegans
Exon95498   312   III: 7585419-7585730 Caenorhabditis elegans
Exon95505   272   III: 7586109-7586380 Caenorhabditis elegans
Exon95511   108   III: 7586662-7586769 Caenorhabditis elegans
Exon95524   228   III: 7589429-7589656 Caenorhabditis elegans
Exon95530   102   III: 7589703-7589804 Caenorhabditis elegans
Exon95539   143   III: 7590537-7590679 Caenorhabditis elegans
Exon95542   91   III: 7590991-7591081 Caenorhabditis elegans
Exon95548   352   III: 7591223-7591574 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1a.2 7584341 7591574 1

1 Sequence

Length
2268

1 Sequence Ontology Term

Identifier Name Description
transcript