WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A5.1e.1 Sequence Name  R13A5.1e.1
Length (nt)  2266   Chromosome Location  III: 7584683-7591581
Chromosome . Primary Identifier  III Chromosome Location . Start  7584683
Chromosome Location . End  7591581 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A5.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000846 cup-5 R13A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A5.1e R13A5.1e 2007   III: 7584689-7585141

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1e.1 7584683 7591581 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon95486   459   III: 7584683-7585141 Caenorhabditis elegans
Exon95496   184   III: 7585191-7585374 Caenorhabditis elegans
Exon95502   312   III: 7585419-7585730 Caenorhabditis elegans
Exon95503   284   III: 7586097-7586380 Caenorhabditis elegans
Exon95515   108   III: 7586662-7586769 Caenorhabditis elegans
Exon95528   228   III: 7589429-7589656 Caenorhabditis elegans
Exon95534   102   III: 7589703-7589804 Caenorhabditis elegans
Exon95537   139   III: 7590537-7590675 Caenorhabditis elegans
Exon95544   91   III: 7590991-7591081 Caenorhabditis elegans
Exon95550   359   III: 7591223-7591581 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1e.1 7584683 7591581 1

1 Sequence

Length
2266

1 Sequence Ontology Term

Identifier Name Description
transcript