WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R13A5.1a Sequence Name  R13A5.1a
Length (nt)  1824   Chromosome Location  III: 7584689-7585141
Chromosome . Primary Identifier  III Chromosome Location . Start  7584689
Chromosome Location . End  7585141
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A5.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE45023 CUP-5, isoform a 69.5 607 Caenorhabditis elegans
 

Other

15 RNAi

WormBase ID
WBRNAi00051888
WBRNAi00017815
WBRNAi00005545
WBRNAi00034912
WBRNAi00065613
WBRNAi00070919
WBRNAi00061869
WBRNAi00082019
WBRNAi00082021
WBRNAi00082020
WBRNAi00086165
WBRNAi00082022
WBRNAi00079362
WBRNAi00079361
WBRNAi00075971

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R13A5.1a 7584689 7585141 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000846 cup-5 R13A5.1 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:R13A5.1a 7584689 7585141 1
CDS:R13A5.1a 7585191 7585374 1
CDS:R13A5.1a 7585419 7585730 1
CDS:R13A5.1a 7586109 7586380 1
CDS:R13A5.1a 7586662 7586769 1
CDS:R13A5.1a 7589429 7589656 1
CDS:R13A5.1a 7589703 7589804 1
CDS:R13A5.1a 7590537 7590679 1
CDS:R13A5.1a 7590991 7591012 1

1 Sequence

Length
1824

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R13A5.1a.2 R13A5.1a.2 2268   III: 7584341-7591574
Transcript:R13A5.1a.1 R13A5.1a.1 2241   III: 7584689-7591570