WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A5.1a.1 Sequence Name  R13A5.1a.1
Length (nt)  2241   Chromosome Location  III: 7584689-7591570
Chromosome . Primary Identifier  III Chromosome Location . Start  7584689
Chromosome Location . End  7591570 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A5.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000846 cup-5 R13A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A5.1a R13A5.1a 1824   III: 7584689-7585141

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1a.1 7584689 7591570 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon95490   453   III: 7584689-7585141 Caenorhabditis elegans
Exon95491   184   III: 7585191-7585374 Caenorhabditis elegans
Exon95497   312   III: 7585419-7585730 Caenorhabditis elegans
Exon95504   272   III: 7586109-7586380 Caenorhabditis elegans
Exon95510   108   III: 7586662-7586769 Caenorhabditis elegans
Exon95523   228   III: 7589429-7589656 Caenorhabditis elegans
Exon95529   102   III: 7589703-7589804 Caenorhabditis elegans
Exon95538   143   III: 7590537-7590679 Caenorhabditis elegans
Exon95541   91   III: 7590991-7591081 Caenorhabditis elegans
Exon95545   348   III: 7591223-7591570 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13A5.1a.1 7584689 7591570 1

1 Sequence

Length
2241

1 Sequence Ontology Term

Identifier Name Description
transcript