WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK112.2a.1 Sequence Name  ZK112.2a.1
Length (nt)  4756   Chromosome Location  III: 7719729-7738105
Chromosome . Primary Identifier  III Chromosome Location . Start  7719729
Chromosome Location . End  7738105 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK112.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003559 ncl-1 ZK112.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK112.2a ZK112.2a 2940   III: 7719791-7719816

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK112.2a.1 7719729 7738105 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon95907   88   III: 7719729-7719816 Caenorhabditis elegans
Exon95910   158   III: 7727126-7727283 Caenorhabditis elegans
Exon95915   68   III: 7727770-7727837 Caenorhabditis elegans
Exon95925   149   III: 7731389-7731537 Caenorhabditis elegans
Exon95934   403   III: 7731589-7731991 Caenorhabditis elegans
Exon95948   369   III: 7732042-7732410 Caenorhabditis elegans
Exon95954   87   III: 7733031-7733117 Caenorhabditis elegans
Exon95964   147   III: 7733318-7733464 Caenorhabditis elegans
Exon95974   168   III: 7734649-7734816 Caenorhabditis elegans
Exon95984   900   III: 7734884-7735783 Caenorhabditis elegans
Exon95994   288   III: 7735832-7736119 Caenorhabditis elegans
Exon96012   1931   III: 7736175-7738105 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK112.2a.1 7719729 7738105 1

1 Sequence

Length
4756

1 Sequence Ontology Term

Identifier Name Description
transcript