WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:ZK112.2g.2 Sequence Name  ZK112.2g.2
Length (nt)  4278   Chromosome Location  III: 7727119-7737708
Chromosome . Primary Identifier  III Chromosome Location . Start  7727119
Chromosome Location . End  7737708 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK112.2g.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003559 ncl-1 ZK112.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK112.2g ZK112.2g 2556   III: 7731521-7731537

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK112.2g.2 7727119 7737708 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon95909   165   III: 7727119-7727283 Caenorhabditis elegans
Exon95919   68   III: 7727770-7727837 Caenorhabditis elegans
Exon95932   149   III: 7731389-7731537 Caenorhabditis elegans
Exon95941   403   III: 7731589-7731991 Caenorhabditis elegans
Exon95952   369   III: 7732042-7732410 Caenorhabditis elegans
Exon95961   87   III: 7733031-7733117 Caenorhabditis elegans
Exon95971   147   III: 7733318-7733464 Caenorhabditis elegans
Exon95981   168   III: 7734649-7734816 Caenorhabditis elegans
Exon95991   900   III: 7734884-7735783 Caenorhabditis elegans
Exon96001   288   III: 7735832-7736119 Caenorhabditis elegans
Exon96009   1534   III: 7736175-7737708 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK112.2g.2 7727119 7737708 1

1 Sequence

Length
4278

1 Sequence Ontology Term

Identifier Name Description
transcript