WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201547 Gene Name  F54H12.9
Sequence Name  ? F54H12.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 and etr-1 based on microarray and RNA-seq studies. Is affected by Ethanol based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 139
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201547

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F54H12.9 F54H12.9 139   III: 7973327-7973465
 

Other

0 CDSs

0 RNAi Result

3 Allele

Public Name
gk964518
gk963887
gk934255

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201547 7973327 7973465 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_7973466..7973716   251 III: 7973466-7973716 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA
  mRNAs that showed increased expression after growing 4 days in 17.1mM ethanol comparing to in water. Differentially expressed genes were found by Cuffdiff, with significant genes satisfying a threshold of false discovery rate (FDR) multiple testing corrected p-value (q-value) of less than 0.05 when the data from the two separate controls and ethanol-treated samples were combined for analysis. WBPaper00046128:ethanol_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201547 7973327 7973465 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
139

1 Sequence Ontology Term