WormMine: Gene WBGene00201547

• WormBase Gene ID: WBGene00201547
• Gene Name: F54H12.9
• Sequence Name: F54H12.9
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by daf-2 and etr-1 based on microarray and RNA-seq studies. Is affected by ethanol based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 139

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00201547

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F54H12.9	F54H12.9	139	III: 7973327-7973465

Other

0 CDSs

0 RNAi Result

3 Allele

• gk964518
• gk963887
• gk934255

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00201547
• Start: 7973327
• End: 7973465
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_7973466..7973716
• Length (nt): 251
• Chromosome Location: III: 7973466-7973716
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_downregulated
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA
	mRNAs that showed increased expression after growing 4 days in 17.1mM ethanol comparing to in water.	Differentially expressed genes were found by Cuffdiff, with significant genes satisfying a threshold of false discovery rate (FDR) multiple testing corrected p-value (q-value) of less than 0.05 when the data from the two separate controls and ethanol-treated samples were combined for analysis.	WBPaper00046128:ethanol_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00201547
• Start: 7973327
• End: 7973465
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 139

1 Sequence Ontology Term