WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06G4.2a.2 Sequence Name  C06G4.2a.2
Length (nt)  2861   Chromosome Location  III: 7979959-7986380
Chromosome . Primary Identifier  III Chromosome Location . Start  7979959
Chromosome Location . End  7986380 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06G4.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000542 clp-1 C06G4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06G4.2a C06G4.2a 2343   III: 7981169-7981270

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.2a.2 7979959 7986380 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96677   75   III: 7979959-7980033 Caenorhabditis elegans
Exon96678   197   III: 7981074-7981270 Caenorhabditis elegans
Exon96685   124   III: 7981365-7981488 Caenorhabditis elegans
Exon96691   138   III: 7981673-7981810 Caenorhabditis elegans
Exon96694   129   III: 7982731-7982859 Caenorhabditis elegans
Exon96700   443   III: 7982907-7983349 Caenorhabditis elegans
Exon96706   159   III: 7983392-7983550 Caenorhabditis elegans
Exon96712   263   III: 7983621-7983883 Caenorhabditis elegans
Exon96718   132   III: 7983944-7984075 Caenorhabditis elegans
Exon96724   470   III: 7984450-7984919 Caenorhabditis elegans
Exon96730   106   III: 7984964-7985069 Caenorhabditis elegans
Exon96736   58   III: 7985118-7985175 Caenorhabditis elegans
Exon96744   90   III: 7985665-7985754 Caenorhabditis elegans
Exon96750   119   III: 7985801-7985919 Caenorhabditis elegans
Exon96760   358   III: 7986023-7986380 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.2a.2 7979959 7986380 1

1 Sequence

Length
2861

1 Sequence Ontology Term

Identifier Name Description
transcript