WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06G4.2b.2 Sequence Name  C06G4.2b.2
Length (nt)  2523   Chromosome Location  III: 7981074-7986314
Chromosome . Primary Identifier  III Chromosome Location . Start  7981074
Chromosome Location . End  7986314 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06G4.2b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000542 clp-1 C06G4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06G4.2b C06G4.2b 2214   III: 7981169-7981270

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.2b.2 7981074 7986314 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96679   197   III: 7981074-7981270 Caenorhabditis elegans
Exon96687   124   III: 7981365-7981488 Caenorhabditis elegans
Exon96696   129   III: 7982731-7982859 Caenorhabditis elegans
Exon96702   443   III: 7982907-7983349 Caenorhabditis elegans
Exon96708   159   III: 7983392-7983550 Caenorhabditis elegans
Exon96714   263   III: 7983621-7983883 Caenorhabditis elegans
Exon96720   132   III: 7983944-7984075 Caenorhabditis elegans
Exon96726   470   III: 7984450-7984919 Caenorhabditis elegans
Exon96732   106   III: 7984964-7985069 Caenorhabditis elegans
Exon96738   58   III: 7985118-7985175 Caenorhabditis elegans
Exon96742   9   III: 7985343-7985351 Caenorhabditis elegans
Exon96746   90   III: 7985665-7985754 Caenorhabditis elegans
Exon96752   119   III: 7985801-7985919 Caenorhabditis elegans
Exon96755   109   III: 7986023-7986131 Caenorhabditis elegans
Exon96761   115   III: 7986200-7986314 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.2b.2 7981074 7986314 1

1 Sequence

Length
2523

1 Sequence Ontology Term

Identifier Name Description
transcript