WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06G4.2a.1 Sequence Name  C06G4.2a.1
Length (nt)  2734   Chromosome Location  III: 7981074-7986328
Chromosome . Primary Identifier  III Chromosome Location . Start  7981074
Chromosome Location . End  7986328 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06G4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000542 clp-1 C06G4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06G4.2a C06G4.2a 2343   III: 7981169-7981270

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.2a.1 7981074 7986328 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96681   197   III: 7981074-7981270 Caenorhabditis elegans
Exon96684   124   III: 7981365-7981488 Caenorhabditis elegans
Exon96690   138   III: 7981673-7981810 Caenorhabditis elegans
Exon96693   129   III: 7982731-7982859 Caenorhabditis elegans
Exon96699   443   III: 7982907-7983349 Caenorhabditis elegans
Exon96705   159   III: 7983392-7983550 Caenorhabditis elegans
Exon96711   263   III: 7983621-7983883 Caenorhabditis elegans
Exon96717   132   III: 7983944-7984075 Caenorhabditis elegans
Exon96723   470   III: 7984450-7984919 Caenorhabditis elegans
Exon96729   106   III: 7984964-7985069 Caenorhabditis elegans
Exon96735   58   III: 7985118-7985175 Caenorhabditis elegans
Exon96743   90   III: 7985665-7985754 Caenorhabditis elegans
Exon96749   119   III: 7985801-7985919 Caenorhabditis elegans
Exon96759   306   III: 7986023-7986328 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.2a.1 7981074 7986328 1

1 Sequence

Length
2734

1 Sequence Ontology Term

Identifier Name Description
transcript