WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06G4.2c.1 Sequence Name  C06G4.2c.1
Length (nt)  2894   Chromosome Location  III: 7981080-7986310
Chromosome . Primary Identifier  III Chromosome Location . Start  7981080
Chromosome Location . End  7986310 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06G4.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000542 clp-1 C06G4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06G4.2c C06G4.2c 342   III: 7981169-7981270

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.2c.1 7981080 7986310 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96682   191   III: 7981080-7981270 Caenorhabditis elegans
Exon96689   446   III: 7981365-7981810 Caenorhabditis elegans
Exon96697   129   III: 7982731-7982859 Caenorhabditis elegans
Exon96703   443   III: 7982907-7983349 Caenorhabditis elegans
Exon96709   159   III: 7983392-7983550 Caenorhabditis elegans
Exon96715   263   III: 7983621-7983883 Caenorhabditis elegans
Exon96721   132   III: 7983944-7984075 Caenorhabditis elegans
Exon96727   470   III: 7984450-7984919 Caenorhabditis elegans
Exon96733   106   III: 7984964-7985069 Caenorhabditis elegans
Exon96739   58   III: 7985118-7985175 Caenorhabditis elegans
Exon96747   90   III: 7985665-7985754 Caenorhabditis elegans
Exon96753   119   III: 7985801-7985919 Caenorhabditis elegans
Exon96756   288   III: 7986023-7986310 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.2c.1 7981080 7986310 1

1 Sequence

Length
2894

1 Sequence Ontology Term

Identifier Name Description
transcript