WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06G4.1.1 Sequence Name  C06G4.1.1
Length (nt)  2821   Chromosome Location  III: 7987121-7990602
Chromosome . Primary Identifier  III Chromosome Location . Start  7987121
Chromosome Location . End  7990602 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06G4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015557 hrpk-2 C06G4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06G4.1 C06G4.1 2661   III: 7987129-7987174

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.1.1 7987121 7990602 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96762   54   III: 7987121-7987174 Caenorhabditis elegans
Exon96763   78   III: 7987220-7987297 Caenorhabditis elegans
Exon96764   87   III: 7987343-7987429 Caenorhabditis elegans
Exon96765   1077   III: 7987476-7988552 Caenorhabditis elegans
Exon96766   162   III: 7988604-7988765 Caenorhabditis elegans
Exon96767   108   III: 7988862-7988969 Caenorhabditis elegans
Exon96768   111   III: 7989016-7989126 Caenorhabditis elegans
Exon96769   260   III: 7989173-7989432 Caenorhabditis elegans
Exon96770   357   III: 7989591-7989947 Caenorhabditis elegans
Exon96771   289   III: 7989995-7990283 Caenorhabditis elegans
Exon96772   238   III: 7990365-7990602 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.1.1 7987121 7990602 1

1 Sequence

Length
2821

1 Sequence Ontology Term

Identifier Name Description
transcript