WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06G4.5.1 Sequence Name  C06G4.5.1
Length (nt)  1502   Chromosome Location  III: 7990715-7996453
Chromosome . Primary Identifier  III Chromosome Location . Start  7990715
Chromosome Location . End  7996453 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06G4.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015559 npr-17 C06G4.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06G4.5 C06G4.5 1311   III: 7990888-7991043

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.5.1 7990715 7996453 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96773   329   III: 7990715-7991043 Caenorhabditis elegans
Exon96774   137   III: 7991627-7991763 Caenorhabditis elegans
Exon96775   217   III: 7991820-7992036 Caenorhabditis elegans
Exon96776   93   III: 7992356-7992448 Caenorhabditis elegans
Exon96777   86   III: 7992743-7992828 Caenorhabditis elegans
Exon96778   87   III: 7993299-7993385 Caenorhabditis elegans
Exon96779   181   III: 7993429-7993609 Caenorhabditis elegans
Exon96780   152   III: 7994144-7994295 Caenorhabditis elegans
Exon96781   100   III: 7994422-7994521 Caenorhabditis elegans
Exon96782   120   III: 7996334-7996453 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06G4.5.1 7990715 7996453 -1

1 Sequence

Length
1502

1 Sequence Ontology Term

Identifier Name Description
transcript