WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K12H4.8.1 Sequence Name  K12H4.8.1
Length (nt)  5883   Chromosome Location  III: 8071967-8080281
Chromosome . Primary Identifier  III Chromosome Location . Start  8071967
Chromosome Location . End  8080281 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K12H4.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000939 dcr-1 K12H4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K12H4.8 K12H4.8 5733   III: 8072110-8072167

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K12H4.8.1 8071967 8080281 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

27 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon96936   201   III: 8071967-8072167 Caenorhabditis elegans
Exon96937   380   III: 8072220-8072599 Caenorhabditis elegans
Exon96938   96   III: 8072702-8072797 Caenorhabditis elegans
Exon96939   247   III: 8072846-8073092 Caenorhabditis elegans
Exon96940   167   III: 8073151-8073317 Caenorhabditis elegans
Exon96941   147   III: 8073367-8073513 Caenorhabditis elegans
Exon96942   187   III: 8073564-8073750 Caenorhabditis elegans
Exon96943   226   III: 8073807-8074032 Caenorhabditis elegans
Exon96944   316   III: 8074601-8074916 Caenorhabditis elegans
Exon96945   306   III: 8074960-8075265 Caenorhabditis elegans
Exon96946   182   III: 8075315-8075496 Caenorhabditis elegans
Exon96947   593   III: 8075543-8076135 Caenorhabditis elegans
Exon96948   331   III: 8076196-8076526 Caenorhabditis elegans
Exon96949   151   III: 8076644-8076794 Caenorhabditis elegans
Exon96950   69   III: 8076845-8076913 Caenorhabditis elegans
Exon96951   180   III: 8076955-8077134 Caenorhabditis elegans
Exon96952   367   III: 8077243-8077609 Caenorhabditis elegans
Exon96953   155   III: 8077678-8077832 Caenorhabditis elegans
Exon96954   243   III: 8077879-8078121 Caenorhabditis elegans
Exon96955   129   III: 8078166-8078294 Caenorhabditis elegans
Exon96956   183   III: 8078339-8078521 Caenorhabditis elegans
Exon96957   372   III: 8078954-8079325 Caenorhabditis elegans
Exon96958   140   III: 8079378-8079517 Caenorhabditis elegans
Exon96959   160   III: 8079583-8079742 Caenorhabditis elegans
Exon96960   134   III: 8079788-8079921 Caenorhabditis elegans
Exon96961   163   III: 8080016-8080178 Caenorhabditis elegans
Exon96962   58   III: 8080224-8080281 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K12H4.8.1 8071967 8080281 -1

1 Sequence

Length
5883

1 Sequence Ontology Term

Identifier Name Description
transcript