WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C50C3.6.1 Sequence Name  C50C3.6.1
Length (nt)  7407   Chromosome Location  III: 8164373-8172710
Chromosome . Primary Identifier  III Chromosome Location . Start  8164373
Chromosome Location . End  8172710 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C50C3.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004187 prp-8 C50C3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C50C3.6 C50C3.6 6990   III: 8164377-8165206

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C50C3.6.1 8164373 8172710 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97171   834   III: 8164373-8165206 Caenorhabditis elegans
Exon97172   238   III: 8165261-8165498 Caenorhabditis elegans
Exon97174   220   III: 8165699-8165918 Caenorhabditis elegans
Exon97175   745   III: 8165991-8166735 Caenorhabditis elegans
Exon97176   1417   III: 8166784-8168200 Caenorhabditis elegans
Exon97179   1002   III: 8168432-8169433 Caenorhabditis elegans
Exon97180   473   III: 8169486-8169958 Caenorhabditis elegans
Exon97181   1648   III: 8170065-8171712 Caenorhabditis elegans
Exon97182   360   III: 8171835-8172194 Caenorhabditis elegans
Exon97183   470   III: 8172241-8172710 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C50C3.6.1 8164373 8172710 1

1 Sequence

Length
7407

1 Sequence Ontology Term

Identifier Name Description
transcript