WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C50C3.9c.1 Sequence Name  C50C3.9c.1
Length (nt)  3927   Chromosome Location  III: 8193843-8201217
Chromosome . Primary Identifier  III Chromosome Location . Start  8193843
Chromosome Location . End  8201217 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C50C3.9c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006772 unc-36 C50C3.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C50C3.9c C50C3.9c 3618   III: 8194040-8194129

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C50C3.9c.1 8193843 8201217 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97213   287   III: 8193843-8194129 Caenorhabditis elegans
Exon97218   229   III: 8194177-8194405 Caenorhabditis elegans
Exon97220   163   III: 8194749-8194911 Caenorhabditis elegans
Exon97222   115   III: 8194960-8195074 Caenorhabditis elegans
Exon97224   697   III: 8195125-8195821 Caenorhabditis elegans
Exon97226   204   III: 8195892-8196095 Caenorhabditis elegans
Exon97228   506   III: 8196276-8196781 Caenorhabditis elegans
Exon97230   234   III: 8196948-8197181 Caenorhabditis elegans
Exon97232   342   III: 8197487-8197828 Caenorhabditis elegans
Exon97235   168   III: 8199142-8199309 Caenorhabditis elegans
Exon97237   95   III: 8199437-8199531 Caenorhabditis elegans
Exon97239   252   III: 8199648-8199899 Caenorhabditis elegans
Exon97241   262   III: 8200114-8200375 Caenorhabditis elegans
Exon97243   190   III: 8200797-8200986 Caenorhabditis elegans
Exon97245   183   III: 8201035-8201217 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C50C3.9c.1 8193843 8201217 -1

1 Sequence

Length
3927

1 Sequence Ontology Term

Identifier Name Description
transcript