WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C50C3.9a.1 Sequence Name  C50C3.9a.1
Length (nt)  4047   Chromosome Location  III: 8193844-8201206
Chromosome . Primary Identifier  III Chromosome Location . Start  8193844
Chromosome Location . End  8201206 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C50C3.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006772 unc-36 C50C3.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C50C3.9a C50C3.9a 3750   III: 8194040-8194129

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C50C3.9a.1 8193844 8201206 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97214   286   III: 8193844-8194129 Caenorhabditis elegans
Exon97217   229   III: 8194177-8194405 Caenorhabditis elegans
Exon97219   163   III: 8194749-8194911 Caenorhabditis elegans
Exon97221   115   III: 8194960-8195074 Caenorhabditis elegans
Exon97223   697   III: 8195125-8195821 Caenorhabditis elegans
Exon97225   204   III: 8195892-8196095 Caenorhabditis elegans
Exon97227   506   III: 8196276-8196781 Caenorhabditis elegans
Exon97229   234   III: 8196948-8197181 Caenorhabditis elegans
Exon97231   342   III: 8197487-8197828 Caenorhabditis elegans
Exon97233   132   III: 8198092-8198223 Caenorhabditis elegans
Exon97234   168   III: 8199142-8199309 Caenorhabditis elegans
Exon97236   95   III: 8199437-8199531 Caenorhabditis elegans
Exon97238   252   III: 8199648-8199899 Caenorhabditis elegans
Exon97240   262   III: 8200114-8200375 Caenorhabditis elegans
Exon97242   190   III: 8200797-8200986 Caenorhabditis elegans
Exon97244   172   III: 8201035-8201206 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C50C3.9a.1 8193844 8201206 -1

1 Sequence

Length
4047

1 Sequence Ontology Term

Identifier Name Description
transcript