WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F09G8.4.1 Sequence Name  F09G8.4.1
Length (nt)  3942   Chromosome Location  III: 8258345-8265805
Chromosome . Primary Identifier  III Chromosome Location . Start  8258345
Chromosome Location . End  8265805 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F09G8.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003562 ncr-2 F09G8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F09G8.4 F09G8.4 3825   III: 8258345-8258495

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F09G8.4.1 8258345 8265805 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97445   151   III: 8258345-8258495 Caenorhabditis elegans
Exon97446   491   III: 8258719-8259209 Caenorhabditis elegans
Exon97447   123   III: 8259271-8259393 Caenorhabditis elegans
Exon97448   213   III: 8259525-8259737 Caenorhabditis elegans
Exon97449   167   III: 8259786-8259952 Caenorhabditis elegans
Exon97450   82   III: 8260001-8260082 Caenorhabditis elegans
Exon97451   138   III: 8260129-8260266 Caenorhabditis elegans
Exon97452   213   III: 8260359-8260571 Caenorhabditis elegans
Exon97453   150   III: 8260618-8260767 Caenorhabditis elegans
Exon97454   191   III: 8260814-8261004 Caenorhabditis elegans
Exon97455   400   III: 8261231-8261630 Caenorhabditis elegans
Exon97456   249   III: 8261703-8261951 Caenorhabditis elegans
Exon97457   111   III: 8261994-8262104 Caenorhabditis elegans
Exon97458   184   III: 8262160-8262343 Caenorhabditis elegans
Exon97461   252   III: 8264182-8264433 Caenorhabditis elegans
Exon97462   219   III: 8264758-8264976 Caenorhabditis elegans
Exon97463   95   III: 8265104-8265198 Caenorhabditis elegans
Exon97464   114   III: 8265247-8265360 Caenorhabditis elegans
Exon97465   399   III: 8265407-8265805 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F09G8.4.1 8258345 8265805 1

1 Sequence

Length
3942

1 Sequence Ontology Term

Identifier Name Description
transcript