WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R05D3.12a.1 Sequence Name  R05D3.12a.1
Length (nt)  3597   Chromosome Location  III: 8380945-8387526
Chromosome . Primary Identifier  III Chromosome Location . Start  8380945
Chromosome Location . End  8387526 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R05D3.12a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019884 R05D3.12 R05D3.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R05D3.12a R05D3.12a 3513   III: 8380957-8381080

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R05D3.12a.1 8380945 8387526 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97791   136   III: 8380945-8381080 Caenorhabditis elegans
Exon97796   253   III: 8381128-8381380 Caenorhabditis elegans
Exon97801   244   III: 8381745-8381988 Caenorhabditis elegans
Exon97804   81   III: 8382042-8382122 Caenorhabditis elegans
Exon97807   549   III: 8382386-8382934 Caenorhabditis elegans
Exon97810   193   III: 8382986-8383178 Caenorhabditis elegans
Exon97813   520   III: 8383469-8383988 Caenorhabditis elegans
Exon97816   195   III: 8384038-8384232 Caenorhabditis elegans
Exon97822   297   III: 8385300-8385596 Caenorhabditis elegans
Exon97823   87   III: 8385650-8385736 Caenorhabditis elegans
Exon97824   226   III: 8386345-8386570 Caenorhabditis elegans
Exon97825   420   III: 8386618-8387037 Caenorhabditis elegans
Exon97826   135   III: 8387086-8387220 Caenorhabditis elegans
Exon97827   261   III: 8387266-8387526 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R05D3.12a.1 8380945 8387526 1

1 Sequence

Length
3597

1 Sequence Ontology Term

Identifier Name Description
transcript