WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R05D3.12d.1 Sequence Name  R05D3.12d.1
Length (nt)  2524   Chromosome Location  III: 8380946-8384730
Chromosome . Primary Identifier  III Chromosome Location . Start  8380946
Chromosome Location . End  8384730 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R05D3.12d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019884 R05D3.12 R05D3.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R05D3.12d R05D3.12d 2220   III: 8380957-8381080

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R05D3.12d.1 8380946 8384730 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97792   135   III: 8380946-8381080 Caenorhabditis elegans
Exon97797   253   III: 8381128-8381380 Caenorhabditis elegans
Exon97802   244   III: 8381745-8381988 Caenorhabditis elegans
Exon97805   81   III: 8382042-8382122 Caenorhabditis elegans
Exon97808   549   III: 8382386-8382934 Caenorhabditis elegans
Exon97811   193   III: 8382986-8383178 Caenorhabditis elegans
Exon97814   520   III: 8383469-8383988 Caenorhabditis elegans
Exon97817   195   III: 8384038-8384232 Caenorhabditis elegans
Exon97820   354   III: 8384377-8384730 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R05D3.12d.1 8380946 8384730 1

1 Sequence

Length
2524

1 Sequence Ontology Term

Identifier Name Description
transcript