WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R05D3.12d.2 Sequence Name  R05D3.12d.2
Length (nt)  2392   Chromosome Location  III: 8380957-8385358
Chromosome . Primary Identifier  III Chromosome Location . Start  8380957
Chromosome Location . End  8385358 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R05D3.12d.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019884 R05D3.12 R05D3.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R05D3.12d R05D3.12d 2220   III: 8380957-8381080

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R05D3.12d.2 8380957 8385358 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon97794   124   III: 8380957-8381080 Caenorhabditis elegans
Exon97798   253   III: 8381128-8381380 Caenorhabditis elegans
Exon97803   244   III: 8381745-8381988 Caenorhabditis elegans
Exon97806   81   III: 8382042-8382122 Caenorhabditis elegans
Exon97809   549   III: 8382386-8382934 Caenorhabditis elegans
Exon97812   193   III: 8382986-8383178 Caenorhabditis elegans
Exon97815   520   III: 8383469-8383988 Caenorhabditis elegans
Exon97818   195   III: 8384038-8384232 Caenorhabditis elegans
Exon97819   174   III: 8384377-8384550 Caenorhabditis elegans
Exon97821   59   III: 8385300-8385358 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R05D3.12d.2 8380957 8385358 1

1 Sequence

Length
2392

1 Sequence Ontology Term

Identifier Name Description
transcript