WormMine: Gene WBGene00271645

• WormBase Gene ID: WBGene00271645
• Gene Name: ZK1236.12
• Sequence Name: ZK1236.12
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in RMDDL; RMDL; and SIBDL based on single-cell RNA-seq studies. Is affected by fhod-1; adr-1; and sir-2.1 based on RNA-seq and microarray studies. Is affected by bortezomib based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 264

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00271645

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:ZK1236.12	ZK1236.12	264	III: 8440997-8441260

Other

0 CDSs

8 RNAi Result

• WBRNAi00059169
• WBRNAi00059170
• WBRNAi00021837
• WBRNAi00076871
• WBRNAi00005476
• WBRNAi00005871
• WBRNAi00038178
• WBRNAi00081186

6 Allele

• gk964518
• gk963887
• gk180152
• gk180151
• gk180153
• gk180150

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00271645
• Start: 8440997
• End: 8441260
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

12 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria: E.faecalis strain OG1RF	Transcripts that showed significantly increased expression after infection by E. faecalis OG1RF.	Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.	WBPaper00059754:E.faecalis_OG1RF_upregulated
	Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014.	N.A.	WBPaper00026929:sir-2.1_overexpression_regulated
	Differentially-expressed genes in the MA lines.		WBPaper00025099:MA_specific
	transcripts that showed significantly increased expression after N2 animals were exposed to 20 uM bortezomib for 4 hours.	Differential expression analyses were performed using limma-voom in Galaxy. Fold change > 2, FDR < 0.05.	WBPaper00062345:bortezomib_4h_upregulated_N2
	transcripts that showed significantly increased expression after zip-1(jy13) animals were exposed to 20 uM bortezomib for 4 hours.	Differential expression analyses were performed using limma-voom in Galaxy. Fold change > 2, FDR < 0.05.	WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
	Transcripts that showed significantly decreased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_downregulated_neural
	Single-cell RNA-Seq cell group 52_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:52_0
	Single-cell RNA-Seq cell group 111_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:111_0
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2 at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066511:adr-1(tm668)_downregulated
	Transcripts that showed significantly decreased expression in fhod-1(tm2363) comparing to in N2 animals.	Differentially expressed genes (defined by false discovery rate (FDR) step up <= 0.05, fold change >1.5) were identified by Gene-Specific Analysis.	WBPaper00060634:fhod-1(tm2363)_downregulated
Bacteria: C.neoformans strain H99	Transcripts that showed significantly increased expression after infection by C. neoformans H99.	Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.	WBPaper00059754:C.neoformans_H99_upregulated
	Single-cell RNA-Seq cell group 22_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:22_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00271645
• Start: 8440997
• End: 8441260
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 264

1 Sequence Ontology Term